A team of assassins exacts a bloody retribution on Joe Logan – a former ninja who escaped his clan – and his family for betraying their ancient code. Rising from his seeming "death," Joe will re-emerge as his former self – Ninja Kamui – to avenge his family and friends and bring down the very clan that made him.

Hachimitsu Academy, once an all-girls school, has become co-ed, and teen Kiyoshi is one of five boys to enroll. When he is caught peeping, Kiyoshi is sent to the schools prison, where his punishment is carried out.